MicroRNAs as a selective channel of communication between competing RNAs: a steady-state theory.
نویسندگان
چکیده
It has recently been suggested that the competition for a finite pool of microRNAs (miRNA) gives rise to effective interactions among their common targets (competing endogenous RNAs or ceRNAs) that could prove to be crucial for posttranscriptional regulation. We have studied a minimal model of posttranscriptional regulation where the emergence and the nature of such interactions can be characterized in detail at steady state. Sensitivity analysis shows that binding free energies and repression mechanisms are the key ingredients for the cross-talk between ceRNAs to arise. Interactions emerge in specific ranges of repression values, can be symmetrical (one ceRNA influences another and vice versa) or asymmetrical (one ceRNA influences another but not the reverse), and may be highly selective, while possibly limited by noise. In addition, we show that nontrivial correlations among ceRNAs can emerge in experimental readouts due to transcriptional fluctuations even in the absence of miRNA-mediated cross-talk.
منابع مشابه
The role of exosomes contents on genetic and epigenetic alterations of recipient cancer cells
Exosomes, as a mediator of cell-to-cell transfer of genetic information, act an important role in intercommunication between tumor cells and their niche including fibroblasts, endothelial cells, adipocytes and monocytes. Several studies have shown that tumor cells can influence their neighboring cells by releasing exosomes. These exosomes provide signaling cues for stimulation, activation, prol...
متن کاملEvaluation of Error Due to Applying Average Rating Curve as downstream Boundary Condition in Unsteady Flow Modeling
The rating curve is the relationship between the water stage and the associated discharge in a givensection of a channel. In steady flow, this relationship usually has exponential type, whereas inunsteady it flow has a looped shape. Since direct developing of actual looped rating curve by usinghydrometric methods is merely possible, steady-state rating curve is commonly used as a downstreamboun...
متن کاملOn The Secrecy of the Cognitive Interference Channel with Channel State
In this paper the secrecy problem in the cognitive state-dependent interference channel is considered. In this scenario we have a primary and a cognitive transmitter-receiver pairs. The cognitive transmitter has the message of the primary sender as side information. In addition, the state of the channel is known at the cognitive encoder. Hence, the cognitive encoder uses this side information t...
متن کاملModeling Equilibrium of microRNA Expression
MicroRNAs are a class of non-coding RNAs and the dysregulated expression of these short RNA molecules was frequently observed in cancer cells. The steady state level of microRNA concentration may differentiate the biological function of the cells between normal and impaired. To understand the steady state or equilibrium of microRNAs, their interactions with transcription factors and target gene...
متن کاملInsights into role of microRNAs in cardiac development, cardiac diseases, and developing novel therapies
Objective(s): MicroRNAs (miRNAs) are a subfamily of small noncoding RNAs that play a variety of roles in regulating gene expression in nearly all organisms. They affect different biological pathways by post-transcriptionally regulating mRNAs. Aside from miRNAs’ role in maintaining cellular homeostasis, their perturbation is related to several pathologic states and dis...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Biophysical journal
دوره 104 5 شماره
صفحات -
تاریخ انتشار 2013